https://comblab706.r-universe.devRecent package updates in comblab706R-universehttps://github.com/comblab706.pnghttps://comblab706.r-universe.devSat, 05 Sep 2026 05:37:19 GMTzjp@dali.edu.cn (Junpeng Zhang)The package aims to identify miRNA sponge or ceRNA modules in heterogeneous data. It provides several functions to study miRNA sponge modules at single-sample and multi-sample levels, including popular methods for inferring gene modules (candidate miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge modules at single-sample and multi-sample levels, as well as several functions to conduct modular analysis of miRNA sponge modules.https://github.com/r-universe/bioc/actions/runs/37933644227Sat, 05 Sep 2026 05:37:19 GMTmiRSM2.9.3successhttps://bioc.r-universe.devhttps://github.com/bioc/miRSMmiRSM.RmdmiRSM.htmlmiRSM: inferring miRNA sponge modules in heterogeneous data2018-08-03 13:20:092026-07-23 08:53:35zjp@dali.edu.cn (Junpeng Zhang)This package provides several functions to explore miRNA sponge (also called ceRNA or miRNA decoy) regulation from putative miRNA-target interactions or/and transcriptomics data (including bulk, single-cell and spatial gene expression data). It provides eight popular methods for identifying miRNA sponge interactions, and an integrative method to integrate miRNA sponge interactions from different methods, as well as the functions to validate miRNA sponge interactions, and infer miRNA sponge modules, conduct enrichment analysis of miRNA sponge modules, and conduct survival analysis of miRNA sponge modules. By using a sample control variable strategy, it provides a function to infer sample-specific miRNA sponge interactions. In terms of sample-specific miRNA sponge interactions, it implements three similarity methods to construct sample-sample correlation network.https://github.com/r-universe/bioc/actions/runs/37304958475Sat, 05 Sep 2026 05:35:53 GMTmiRspongeR2.17.4successhttps://bioc.r-universe.devhttps://github.com/bioc/miRspongeRmiRspongeR.RmdmiRspongeR.htmlIdentification and analysis of miRNA sponge regulation2019-03-05 13:50:012026-07-23 07:23:54